C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373493 RBBP4-001 ENSG00000162521 9606 + 1:32651148-32686211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373493 3.769±0.00 5.109±0.00 0.850±0.00 5.062±1.64 3.151±1.29 2.822±0.26 1.074±0.00 3.112±1.32 1.827±0.21 2.609±0.58 3.035±2.13 5.782±1.74 2.233±0.06 6.258±1.25

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0006200 IDA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006334 TAS nucleosome assembly
GO:0006335 IDA DNA replication-dependent nucleosome assembly
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008285 TAS negative regulation of cell proliferation
GO:0016580 NAS Sin3 complex
GO:0016581 NAS NuRD complex
GO:0016589 IDA NURF complex
GO:0031492 IDA nucleosomal DNA binding
GO:0031497 IDA chromatin assembly
GO:0033186 IDA CAF-1 complex
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0035098 IDA ESC/E(Z) complex
GO:0042393 NAS histone binding
GO:0042826 IPI histone deacetylase binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0051726 TAS regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102598 Rbbp4-001 protein_coding Mus_musculus 0 1991
ENSMUST00000188426 RP24-459N9.1-001 processed_pseudogene Mus_musculus 0 915
ENSMUST00000140291 Rbbp4-004 processed_transcript Mus_musculus 0 523
ENSMUST00000147183 Rbbp4-003 retained_intron Mus_musculus 0 414
ENSMUST00000135585 Rbbp4-002 protein_coding Mus_musculus 0 335
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000007 66

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