C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373615 LHX2-001 ENSG00000106689 9606 + 9:124011610-124033301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENST00000373615
Transcript ID Brain Liver Ovary Placenta Testis
ENST00000373615 6.159±0.00 0.671±0.00 0.032±0.00 0.274±0.00 0.505±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WO CIL_0006WO_0001 CGP 9:123379654-124033301
CIL_000847 CIL_000847_0001 VISTA 9:123475439-124077650
CIL_0008FJ CIL_0008FJ_0001 VISTA 9:123533313-124136573
CIL_0007MV CIL_0007MV_0001 UCNEbase 9:123742251-124385977
CIL_0008N3 CIL_0008N3_0001 VISTA 9:123985007-124587009
CIL_0006WH CIL_0006WH_0001 CGP 9:124001670-124353307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001076 IEA RNA polymerase II transcription factor binding transcription factor activity
GO:0001843 IEA neural tube closure
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0007411 IEA axon guidance
GO:0007420 IEA brain development
GO:0007498 IEA mesoderm development
GO:0008270 IEA zinc ion binding
GO:0009953 IEA dorsal/ventral pattern formation
GO:0021537 IEA telencephalon development
GO:0021772 IEA olfactory bulb development
GO:0021978 IEA telencephalon regionalization
GO:0021987 IEA cerebral cortex development
GO:0022008 IEA neurogenesis
GO:0030182 IEA neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IEA anatomical structure formation involved in morphogenesis
GO:0048675 IEA axon extension
GO:0060041 IEA retina development in camera-type eye
GO:2000678 IEA negative regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000253 Lhx2-001 protein_coding Mus_musculus 0 3112
ENSMUST00000143783 Lhx2-003 protein_coding Mus_musculus 0 1552
ENSMUST00000175896 Lhx2-006 retained_intron Mus_musculus 0 793
ENSMUST00000133661 Lhx2-005 protein_coding Mus_musculus 0 785
ENSMUST00000176229 Lhx2-007 nonsense_mediated_decay Mus_musculus 0 577
ENSMUST00000155964 Lhx2-002 protein_coding Mus_musculus 0 496
ENSMUST00000093486 Lhx9-201 protein_coding Mus_musculus 0 305
ENSMUST00000112026 Lhx9-005 protein_coding Mus_musculus 0 305
ENSMUST00000046870 Lhx9-001 protein_coding Mus_musculus 0 305
ENSMUST00000112030 Lhx9-004 protein_coding Mus_musculus 0 305
ENSMUST00000019374 Lhx9-002 protein_coding Mus_musculus 0 305

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