C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373795 SRSF4-001 ENSG00000116350 9606 - 1:29147743-29181987 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373795 10.928±0.00 29.516±0.00 2.411±0.00 7.186±3.77 8.750±5.61 23.162±19.56 11.683±9.66 16.468±15.28 10.834±3.43 38.467±33.70 51.840±0.00 20.528±13.14 24.053±8.66 15.580±2.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892
CIL_0003PY CIL_0003PY_0002 CGP 1:29119428-29181987

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053819 Srsf4-001 protein_coding Mus_musculus 0 2109
ENSMUST00000030743 Srsf4-002 protein_coding Mus_musculus 0 1814
ENSMUST00000134943 Srsf4-004 processed_transcript Mus_musculus 0 619
ENSMUST00000129966 Srsf4-003 processed_transcript Mus_musculus 0 276
ENSMUST00000130411 Srsf6-001 protein_coding Mus_musculus 0 222
ENSMUST00000017065 Srsf6-002 processed_transcript Mus_musculus 0 213

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