C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373812 YTHDF2-001 ENSG00000198492 9606 + 1:28736759-28769775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373812
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373812 8.126±0.00 7.964±0.00 6.503±2.55 8.097±0.00 3.549±0.00 10.145±0.00 4.902±2.31 8.000±0.00 2.513±1.88 4.096±0.00 7.476±7.09 10.039±2.41 8.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0006959 TAS humoral immune response
GO:0043488 IMP regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:1990247 IDA N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152796 Ythdf2-001 protein_coding Mus_musculus 0 4165
ENSMUST00000102570 Ythdf2-002 retained_intron Mus_musculus 0 2981
ENSMUST00000120791 Gm6823-001 processed_pseudogene Mus_musculus 0 2555
ENSMUST00000120248 Gm8401-001 processed_pseudogene Mus_musculus 0 2540
ENSMUST00000085181 Ythdf2-003 protein_coding Mus_musculus 0 756
ENSMUST00000165072 Ythdf2-004 protein_coding Mus_musculus 0 405
ENSDART00000025171 ythdf1-001 protein_coding Danio_rerio 0 385

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