C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-POU domain containing, octamer-binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373841 NONO-004 ENSG00000147140 9606 + X:71283633-71301168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373841 16.013±0.00 24.413±0.00 3.094±0.00 5.282±1.42 16.657±0.00 13.085±0.00 8.750±0.00 15.351±13.09 9.781±5.34 9.958±4.35 5.046±0.00 31.459±15.39 18.369±3.10 17.760±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067U CIL_00067U_0001 CGP X:71239624-71301168
CIL_00068D CIL_00068D_0001 CGP X:71283192-71305371

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 ISS core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007623 ISS circadian rhythm
GO:0008380 IEA RNA splicing
GO:0016020 IDA membrane
GO:0016363 IDA nuclear matrix
GO:0042382 IDA paraspeckles
GO:0042752 ISS regulation of circadian rhythm
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:1903377 IDA negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033673 Nono-001 protein_coding Mus_musculus 0 2274
ENSMUST00000120076 Gm8806-001 processed_pseudogene Mus_musculus 0 1877
ENSMUST00000126019 Nono-002 retained_intron Mus_musculus 0 909
ENSMUST00000136251 Nono-005 retained_intron Mus_musculus 0 592
ENSMUST00000147498 Nono-004 retained_intron Mus_musculus 0 518
ENSMUST00000134783 Nono-007 retained_intron Mus_musculus 0 459
ENSMUST00000148312 Nono-006 processed_transcript Mus_musculus 0 372
ENSMUST00000147708 Nono-003 protein_coding Mus_musculus 0 370
ENSMUST00000119279 Gm11366-001 processed_pseudogene Mus_musculus 0 250

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