C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: APOBEC1 complementation factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374001 A1CF-001 ENSG00000148584 9606 - 10:50799409-50885675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungOvaryTestisENST00000374001
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Testis
ENST00000374001 0.025±0.00 1.567±0.00 0.016±0.00 0.816±0.00 12.679±12.01 2.301±0.00 0.006±0.00 0.032±0.00 0.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EK CIL_0006EK_0002 CGP 10:50799409-52298350

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006397 IEA mRNA processing
GO:0010467 TAS gene expression
GO:0016554 TAS cytidine to uridine editing
GO:0016556 TAS mRNA modification
GO:0030895 IDA apolipoprotein B mRNA editing enzyme complex
GO:0050821 IDA protein stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075838 A1cf-201 protein_coding Mus_musculus 0 2185
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00000008 66
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00000008 66

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