C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ER degradation enhancer, mannosidase alpha-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374491 EDEM2-002 ENSG00000088298 9606 - 20:35115364-35147319 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374491
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374491 0.770±0.00 1.052±0.00 0.638±0.34 9.482±0.00 3.715±2.42 2.819±0.00 0.969±0.12 3.755±1.86 7.316±0.00 1.759±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AB CIL_0006AB_0001 CGP 20:35002404-35147364
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004571 IEA mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006457 TAS protein folding
GO:0006986 IEA response to unfolded protein
GO:0016020 IEA membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040833 Edem2-001 protein_coding Mus_musculus 0 1877
ENSMUST00000139868 Edem2-002 retained_intron Mus_musculus 0 774
ENSMUST00000148571 Edem2-003 processed_transcript Mus_musculus 0 464
ENSMUST00000131350 Edem2-004 retained_intron Mus_musculus 0 405

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