C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Cdc42 guanine nucleotide exchange factor (GEF) 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374870 ARHGEF9-013 ENSG00000131089 9606 - X:63634971-63755089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374870
Transcript ID Adrenal Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374870 1.453±0.00 0.941±0.00 15.866±0.00 2.243±0.00 1.370±0.00 0.194±0.00 0.835±0.00 0.220±0.00 1.398±0.89 0.882±0.01 1.274±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RM CIL_0002RM_0001 CGP X:63347228-63809274
CIL_0003JJ CIL_0003JJ_0002 CGP X:63634967-64205744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007268 TAS synaptic transmission
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0034220 TAS ion transmembrane transport
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0043065 TAS positive regulation of apoptotic process
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0055085 TAS transmembrane transport
GO:0097190 TAS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113885 Arhgef9-005 protein_coding Mus_musculus 0 3079
ENSMUST00000113883 Arhgef9-003 protein_coding Mus_musculus 0 3044
ENSMUST00000113876 Arhgef9-001 protein_coding Mus_musculus 0 2974
ENSMUST00000113882 Arhgef9-002 protein_coding Mus_musculus 0 2813
ENSMUST00000113878 Arhgef9-201 protein_coding Mus_musculus 0 2787
ENSMUST00000182001 Arhgef9-009 protein_coding Mus_musculus 0 2248
ENSMUST00000181987 Arhgef9-008 protein_coding Mus_musculus 0 2010
ENSMUST00000113884 Arhgef9-007 protein_coding Mus_musculus 0 2010
ENSMUST00000113873 Arhgef9-004 protein_coding Mus_musculus 0 1919
ENSMUST00000128565 Arhgef9-006 nonsense_mediated_decay Mus_musculus 0 1677
ENSMUST00000182562 Arhgef9-010 protein_coding Mus_musculus 0 401
ENSMUST00000182135 Arhgef9-012 processed_transcript Mus_musculus 0 248
ENSMUST00000182137 Arhgef9-011 protein_coding Mus_musculus 0 246

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