C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: supervillin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375400 SVIL-001 ENSG00000197321 9606 - 10:29457338-29735804 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000375400
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000375400 11.419±0.00 8.962±0.00 3.745±0.00 1.066±0.42 7.498±3.51 12.630±6.92 4.679±0.00 0.575±0.00 7.034±0.24 13.515±8.94 5.402±2.84 6.164±4.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002G9 CIL_0002G9_0002 CGP 10:29457338-30115494

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007010 IEA cytoskeleton organization
GO:0007519 IMP skeletal muscle tissue development
GO:0015629 IDA actin cytoskeleton
GO:0042995 IEA cell projection
GO:0043034 IDA costamere
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143254 Svil-002 protein_coding Mus_musculus 0 4043
ENSMUST00000127297 Svil-013 protein_coding Mus_musculus 0 4015
ENSMUST00000025079 Svil-201 protein_coding Mus_musculus 0 3803
ENSMUST00000140448 Svil-008 protein_coding Mus_musculus 0 3803
ENSMUST00000126977 Svil-001 protein_coding Mus_musculus 0 3803
ENSMUST00000131609 Svil-005 nonsense_mediated_decay Mus_musculus 0 3507
ENSMUST00000125512 Svil-012 nonsense_mediated_decay Mus_musculus 0 2069
ENSMUST00000129543 Svil-006 retained_intron Mus_musculus 0 767
ENSMUST00000138258 Svil-003 retained_intron Mus_musculus 0 503
ENSMUST00000131210 Svil-004 retained_intron Mus_musculus 0 411
ENSMUST00000146723 Svil-010 protein_coding Mus_musculus 0 403

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