C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil alpha-helical rod protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376266 CCHCR1-001 ENSG00000204536 9606 - 6:31142439-31158238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungMuscleOvaryTestisENST00000376266
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000376266 5.261±0.00 1.115±0.00 1.557±1.08 0.993±0.51 1.051±0.40 0.794±0.00 2.225±0.00 1.506±0.00 9.501±0.88 9.242±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005814 IDA centriole
GO:0007275 IEA multicellular organismal development
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173903 Cchcr1-004 protein_coding Mus_musculus 0 1864
ENSMUST00000164242 Cchcr1-002 protein_coding Mus_musculus 0 1796
ENSMUST00000045956 Cchcr1-001 protein_coding Mus_musculus 0 1786
ENSMUST00000173986 Cchcr1-005 processed_transcript Mus_musculus 0 252

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