C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoserine aminotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376588 PSAT1-001 ENSG00000135069 9606 + 9:78297143-78330093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376588 2.645±0.00 3.321±0.00 4.949±0.00 36.091±16.97 0.943±0.26 0.675±0.00 0.130±0.01 32.091±4.09 12.875±11.75 0.239±0.00 0.058±0.00 15.239±9.48 2.319±0.18 5.212±1.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091W CIL_00091W_0001 VISTA 9:78095963-78699187
CIL_0007V7 CIL_0007V7_0001 VISTA 9:78137288-78740904

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004648 NAS:IEA O-phospho-L-serine:2-oxoglutarate aminotransferase activity
GO:0005829 TAS cytosol
GO:0006564 NAS:IEA L-serine biosynthetic process
GO:0008152 IEA metabolic process
GO:0008615 NAS pyridoxine biosynthetic process
GO:0008652 TAS cellular amino acid biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025542 Psat1-001 protein_coding Mus_musculus 0 1229
ENSMUST00000162053 Psat1-002 protein_coding Mus_musculus 0 1164
ENSMUST00000162416 Psat1-007 protein_coding Mus_musculus 0 608
ENSMUST00000160170 Psat1-005 retained_intron Mus_musculus 2e-38 165

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