C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sp2 transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376741 SP2-001 ENSG00000167182 9606 + 17:47896150-47928957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376741
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376741 7.047±0.00 9.215±0.00 0.515±0.00 3.064±2.50 3.131±2.77 3.331±2.37 3.212±2.97 2.632±2.40 1.250±0.93 3.927±3.47 4.527±4.33 7.979±4.12 7.218±1.37 6.265±1.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006955 TAS immune response
GO:0035264 IEA multicellular organism growth
GO:0042826 IPI histone deacetylase binding
GO:0046872 IEA metal ion binding
GO:0048144 IEA fibroblast proliferation
GO:0048568 IEA embryonic organ development
GO:0072358 IEA cardiovascular system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107624 Sp2-002 protein_coding Mus_musculus 0 2702
ENSMUST00000107626 Sp2-201 protein_coding Mus_musculus 0 2671
ENSMUST00000107623 Sp2-003 protein_coding Mus_musculus 0 2562
ENSMUST00000062652 Sp2-001 protein_coding Mus_musculus 0 2394

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