C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Treacher Collins-Franceschetti syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377797 TCOF1-201 ENSG00000070814 9606 + 5:150357639-150400307 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000377797
Transcript ID Adipose Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000377797 1.743±0.00 0.832±0.50 0.847±0.00 1.596±0.00 0.543±0.00 2.020±0.00 6.466±2.91 3.176±0.00 5.158±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0005215 TAS transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006810 IEA transport
GO:0042790 IEA transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163446 Tcof1-003 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000176630 Tcof1-001 protein_coding Mus_musculus 0 497
ENSMUST00000175934 Tcof1-005 protein_coding Mus_musculus 0 483
ENSMUST00000177172 Tcof1-004 protein_coding Mus_musculus 0 473
ENSMUST00000177343 Tcof1-007 protein_coding Mus_musculus 0 243
ENSMUST00000176088 Tcof1-008 retained_intron Mus_musculus 0.000000000000003 90

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