C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tudor domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377881 TDRD3-003 ENSG00000083544 9606 + 13:60397334-60573872 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000377881
Transcript ID Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000377881 2.046±0.00 1.402±0.68 2.180±0.00 2.788±0.00 2.458±0.06 1.581±0.33 0.889±0.00 1.812±1.14 1.113±0.00 3.768±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MG CIL_0000MG_0001 CGP 13:59665583-60573878
CIL_0005KQ CIL_0005KQ_0002 CGP 13:60396457-61415522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0016568 IEA chromatin modification
GO:0035064 IDA methylated histone binding
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:2001141 IDA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168275 Tdrd3-003 protein_coding Mus_musculus 0 2405
ENSMUST00000170865 Tdrd3-001 protein_coding Mus_musculus 0 2337
ENSMUST00000169504 Tdrd3-002 protein_coding Mus_musculus 0 2250
ENSMUST00000163714 Tdrd3-005 protein_coding Mus_musculus 0 920
ENSMUST00000170712 Tdrd3-004 protein_coding Mus_musculus 0 634

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