C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 9, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378308 USP9X-001 ENSG00000124486 9606 + X:41085635-41232597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378308
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378308 11.154±0.00 5.298±0.00 7.492±0.00 9.345±0.90 9.238±1.39 7.694±1.44 8.138±0.68 10.105±3.24 9.469±6.32 7.929±2.17 13.974±1.64 3.820±3.36 4.372±0.49 7.214±2.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QE CIL_0005QE_0001 CGP X:40648306-41236579
CIL_0005QB CIL_0005QB_0001 CGP X:41085635-41364472

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IMP neuron migration
GO:0004197 TAS cysteine-type endopeptidase activity
GO:0004221 TAS ubiquitin thiolesterase activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007179 IMP transforming growth factor beta receptor signaling pathway
GO:0007292 TAS female gamete generation
GO:0008234 TAS cysteine-type peptidase activity
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016579 IDA protein deubiquitination
GO:0030426 IDA growth cone
GO:0030509 IDA BMP signaling pathway
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0048675 IMP axon extension
GO:0070410 IPI co-SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089302 Usp9x-001 protein_coding Mus_musculus 0 11500
ENSMUST00000091188 Usp9y-001 protein_coding Mus_musculus 0 7758
ENSMUST00000169594 Usp9x-002 protein_coding Mus_musculus 0 3679
ENSMUST00000139764 Usp9x-004 retained_intron Mus_musculus 0 3171
ENSMUST00000133997 Usp9x-005 protein_coding Mus_musculus 0 1166
ENSMUST00000174762 Usp9x-006 retained_intron Mus_musculus 0 928
ENSMUST00000124097 Usp9x-003 retained_intron Mus_musculus 0 822
ENSMUST00000149021 Usp9x-007 protein_coding Mus_musculus 0 697
ENSMUST00000168236 Gm17538-201 processed_pseudogene Mus_musculus 0 460
ENSMUST00000120922 Gm15027-001 unprocessed_pseudogene Mus_musculus 0 228
ENSMUST00000118324 Gm14536-001 unprocessed_pseudogene Mus_musculus 0 228

Loading