C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aristaless related homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379044 ARX-001 ENSG00000004848 9606 - X:25003694-25015948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000379044
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000379044 0.018±0.00 0.092±0.00 2.037±0.74 0.394±0.00 0.072±0.05 0.087±0.00 0.496±0.46 2.377±1.68 23.275±25.60 0.217±0.01 8.552±4.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084H CIL_00084H_0001 VISTA X:24441239-25041771
CIL_0008NE CIL_0008NE_0001 VISTA X:24504486-25106506
CIL_0008NF CIL_0008NF_0001 VISTA X:24546114-25147616
CIL_0008NL CIL_0008NL_0001 VISTA X:24576218-25177967
CIL_0008NM CIL_0008NM_0001 VISTA X:24597265-25200155
CIL_0008W8 CIL_0008W8_0001 VISTA X:24627531-25229450
CIL_0008W7 CIL_0008W7_0001 VISTA X:24689762-25291464
CIL_0001X9 CIL_0001X9_0002 CGP X:24693919-25015948
CIL_0008W6 CIL_0008W6_0001 VISTA X:24698950-25300639
CIL_0009CI CIL_0009CI_0001 VISTA X:24700754-25302415
CIL_0007PA CIL_0007PA_0001 UCNEbase X:24805232-25650665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001764 IEA neuron migration
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007411 IEA axon guidance
GO:0021759 IEA globus pallidus development
GO:0021772 IEA olfactory bulb development
GO:0021800 IEA cerebral cortex tangential migration
GO:0021831 IEA embryonic olfactory bulb interneuron precursor migration
GO:0021846 IEA cell proliferation in forebrain
GO:0021853 IEA cerebral cortex GABAergic interneuron migration
GO:0030900 IEA forebrain development
GO:0042127 IEA regulation of cell proliferation
GO:0044241 IEA lipid digestion
GO:0046622 IEA positive regulation of organ growth
GO:0072148 IEA epithelial cell fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046565 Arx-001 protein_coding Mus_musculus 0 2573
ENSMUST00000113947 Arx-002 protein_coding Mus_musculus 0 2479
ENSMUST00000187010 Arx-003 retained_intron Mus_musculus 0 425

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