C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brain and reproductive organ-expressed (TNFRSF1A modulator)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379624 BRE-003 ENSG00000158019 9606 + 2:27890750-28338901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379624
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379624 8.855±0.00 8.200±0.00 8.161±1.91 5.206±1.56 6.392±0.00 17.412±0.00 11.149±9.67 5.870±3.58 4.781±0.00 11.202±6.83 13.459±8.54 18.276±1.91 10.503±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013J CIL_00013J_0001 CGP 2:27663471-27988087
CIL_00013K CIL_00013K_0001 CGP 2:27771717-27988087
CIL_0003JP CIL_0003JP_0002 CGP 2:27781364-28338901
CIL_0003JO CIL_0003JO_0002 CGP 2:27889941-28417312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000152 IDA nuclear ubiquitin ligase complex
GO:0000268 TAS peroxisome targeting sequence binding
GO:0005164 IDA tumor necrosis factor receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006302 IMP double-strand break repair
GO:0006915 IEA apoptotic process
GO:0006974 IEP cellular response to DNA damage stimulus
GO:0007165 TAS signal transduction
GO:0010212 IMP response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 IMP G2 DNA damage checkpoint
GO:0031593 IDA polyubiquitin binding
GO:0045739 IMP positive regulation of DNA repair
GO:0070531 IDA BRCA1-A complex
GO:0070552 IDA BRISC complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080598 Bre-001 protein_coding Mus_musculus 0 1784
ENSMUST00000114515 Bre-010 protein_coding Mus_musculus 0 1471
ENSMUST00000131995 Bre-007 protein_coding Mus_musculus 0 1430
ENSMUST00000071531 Bre-003 protein_coding Mus_musculus 0 1430
ENSMUST00000063813 Bre-002 protein_coding Mus_musculus 0 1430
ENSMUST00000114507 Bre-016 protein_coding Mus_musculus 0 1343
ENSMUST00000114514 Bre-005 retained_intron Mus_musculus 0 1066
ENSMUST00000147592 Bre-008 retained_intron Mus_musculus 0 756
ENSMUST00000125589 Bre-009 nonsense_mediated_decay Mus_musculus 0 564
ENSDART00000056742 bre-201 protein_coding Danio_rerio 0 542
ENSDART00000137091 bre-001 protein_coding Danio_rerio 0 475
ENSMUST00000130719 Bre-014 processed_transcript Mus_musculus 0 422
ENSMUST00000152211 Bre-006 retained_intron Mus_musculus 0 388
ENSMUST00000155155 Bre-011 processed_transcript Mus_musculus 0 287
ENSMUST00000128132 Bre-004 nonsense_mediated_decay Mus_musculus 0 213
ENSMUST00000155888 Bre-015 processed_transcript Mus_musculus 0 202
ENSMUST00000142394 Mrpl33-007 processed_transcript Mus_musculus 1.99993e-41 174

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