C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brain and reproductive organ-expressed (TNFRSF1A modulator)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379629 BRE-009 ENSG00000158019 9606 + 2:27894545-28233315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungOvaryENST00000379629
Transcript ID Breast Lung Ovary
ENST00000379629 4.010±0.00 6.430±0.00 3.204±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013J CIL_00013J_0001 CGP 2:27663471-27988087
CIL_00013K CIL_00013K_0001 CGP 2:27771717-27988087
CIL_0003JP CIL_0003JP_0002 CGP 2:27781364-28338901
CIL_0003JO CIL_0003JO_0002 CGP 2:27889941-28417312

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114515 Bre-010 protein_coding Mus_musculus 0 837
ENSMUST00000114514 Bre-005 retained_intron Mus_musculus 0 837
ENSMUST00000080598 Bre-001 protein_coding Mus_musculus 0 837
ENSMUST00000147592 Bre-008 retained_intron Mus_musculus 0 675
ENSMUST00000131995 Bre-007 protein_coding Mus_musculus 0 660
ENSMUST00000071531 Bre-003 protein_coding Mus_musculus 0 660
ENSMUST00000063813 Bre-002 protein_coding Mus_musculus 0 660
ENSMUST00000114507 Bre-016 protein_coding Mus_musculus 0 573
ENSMUST00000125589 Bre-009 nonsense_mediated_decay Mus_musculus 0 564
ENSMUST00000152211 Bre-006 retained_intron Mus_musculus 0 267
ENSMUST00000128132 Bre-004 nonsense_mediated_decay Mus_musculus 8.99634e-43 178
ENSMUST00000155155 Bre-011 processed_transcript Mus_musculus 8.99634e-43 178
ENSMUST00000142394 Mrpl33-007 processed_transcript Mus_musculus 4.00001e-41 172

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