C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras responsive element binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379938 RREB1-001 ENSG00000124782 9606 + 6:7107808-7251980 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000379938
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000379938 1.348±0.00 0.235±0.00 4.705±0.00 0.852±0.00 3.983±0.00 0.900±0.00 1.271±0.63 2.739±0.00 2.696±0.00 3.930±3.52 1.235±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S8 CIL_0003S8_0001 CGP 6:6588108-7251980
CIL_000817 CIL_000817_0001 VISTA 6:6863717-7465821
CIL_0003S7 CIL_0003S7_0001 CGP 6:7107597-7347446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007265 TAS Ras protein signal transduction
GO:0007275 TAS multicellular organismal development
GO:0016604 TAS nuclear body
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 TAS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128570 Rreb1-005 protein_coding Mus_musculus 0 4052
ENSMUST00000037232 Rreb1-201 protein_coding Mus_musculus 0 4047
ENSMUST00000110238 Rreb1-001 protein_coding Mus_musculus 0 4026
ENSMUST00000149745 Rreb1-003 protein_coding Mus_musculus 0 3670
ENSMUST00000110237 Rreb1-002 protein_coding Mus_musculus 0 3670
ENSMUST00000124268 Rreb1-004 nonsense_mediated_decay Mus_musculus 0 3382
ENSMUST00000124373 Rreb1-006 nonsense_mediated_decay Mus_musculus 0 708

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