C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAFB-like, transcription modulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380516 SLTM-001 ENSG00000137776 9606 - 15:58879045-58933653 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380516 6.464±0.00 9.659±0.00 2.230±0.00 4.699±2.28 5.262±0.50 5.256±0.13 4.281±3.15 6.232±1.31 3.869±0.37 2.632±0.00 4.570±0.00 9.920±8.13 7.762±6.97 17.789±7.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024E CIL_00024E_0001 CGP 15:58865175-59097419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049263 Sltm-201 protein_coding Mus_musculus 0 4314
ENSDART00000123464 sltm-202 protein_coding Danio_rerio 0 274
ENSDART00000139546 sltm-006 protein_coding Danio_rerio 0 274
ENSDART00000142818 sltm-001 protein_coding Danio_rerio 0 274
ENSDART00000142723 sltm-005 retained_intron Danio_rerio 2e-31 143
ENSDART00000142480 sltm-002 processed_transcript Danio_rerio 2e-26 126

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