C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain GRB2-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380607 SH3GL2-001 ENSG00000107295 9606 + 9:17579123-17797129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000380607
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000380607 0.040±0.00 1.470±0.00 51.864±16.02 0.198±0.08 0.195±0.09 1.390±0.95 5.186±0.00 0.009±0.00 0.637±0.06 0.352±0.34 0.162±0.08 3.852±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008E9 CIL_0008E9_0001 VISTA 9:17022202-17624373
CIL_0007VQ CIL_0007VQ_0001 VISTA 9:17031973-17632582
CIL_00013X CIL_00013X_0001 CGP 9:17134982-17797129
CIL_00013Y CIL_00013Y_0001 CGP 9:17579082-18910950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002090 IEA regulation of receptor internalization
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007165 TAS signal transduction
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007411 TAS axon guidance
GO:0007417 TAS central nervous system development
GO:0008289 IEA lipid binding
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030669 TAS clathrin-coated endocytic vesicle membrane
GO:0042059 TAS negative regulation of epidermal growth factor receptor signaling pathway
GO:0042802 IPI identical protein binding
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048488 IEA synaptic vesicle endocytosis
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030212 Sh3gl2-001 protein_coding Mus_musculus 0 1709
ENSMUST00000107188 Sh3gl2-002 protein_coding Mus_musculus 0 1297
ENSMUST00000107189 Sh3gl2-003 protein_coding Mus_musculus 0 928
ENSMUST00000133109 Sh3gl2-005 protein_coding Mus_musculus 0 832
ENSMUST00000107184 Sh3gl2-004 protein_coding Mus_musculus 0 599

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