C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: katanin p60 subunit A-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380617 KATNAL1-002 ENSG00000102781 9606 - 13:30208480-30307026 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000380617
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000380617 2.149±0.00 14.004±0.00 3.219±0.18 2.173±0.00 4.887±0.00 5.580±0.00 3.356±0.00 0.982±0.30 1.196±0.48 0.438±0.05 22.121±14.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003E1 CIL_0003E1_0001 CGP 13:29764371-30307484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0008017 IEA microtubule binding
GO:0008568 IEA microtubule-severing ATPase activity
GO:0009378 IEA four-way junction helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047257 Katnal1-001 protein_coding Mus_musculus 0 1613
ENSMUST00000110508 Katnal1-002 processed_transcript Mus_musculus 0 1310
ENSMUST00000110509 Katnal1-003 protein_coding Mus_musculus 0 763
ENSMUST00000147473 Katnal1-007 protein_coding Mus_musculus 0 669

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