C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAN3 poly(A) specific ribonuclease subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380958 PAN3-002 ENSG00000152520 9606 + 13:28138506-28292539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonLiverLungMuscleENST00000380958
Transcript ID Bladder Colon Liver Lung Muscle
ENST00000380958 1.122±0.00 3.017±0.00 6.417±0.00 3.295±0.00 0.541±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MT CIL_0007MT_0001 UCNEbase 13:27505095-28294517
CIL_0000G0 CIL_0000G0_0002 CGP 13:28003274-28295335
CIL_0000G1 CIL_0000G1_0002 CGP 13:28138506-28495128

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 IEA deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0004535 IDA poly(A)-specific ribonuclease activity
GO:0004672 IEA protein kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005829 TAS cytosol
GO:0006468 IEA protein phosphorylation
GO:0006605 IEA protein targeting
GO:0010467 TAS gene expression
GO:0010606 IEA positive regulation of cytoplasmic mRNA processing body assembly
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0031251 IDA PAN complex
GO:0046872 IEA metal ion binding
GO:0090503 IDA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176600 Pan3-002 protein_coding Mus_musculus 0 3637
ENSMUST00000176753 Pan3-003 protein_coding Mus_musculus 0 2660
ENSMUST00000031651 Pan3-001 protein_coding Mus_musculus 0 2619
ENSMUST00000177465 Pan3-004 nonsense_mediated_decay Mus_musculus 0 2407
ENSMUST00000176596 Pan3-005 nonsense_mediated_decay Mus_musculus 0 2366
ENSMUST00000175807 Pan3-006 protein_coding Mus_musculus 0 1395
ENSMUST00000176505 Pan3-007 retained_intron Mus_musculus 0 1253
ENSMUST00000176466 Pan3-009 nonsense_mediated_decay Mus_musculus 0 957
ENSMUST00000177328 Pan3-012 retained_intron Mus_musculus 0 931
ENSDART00000048273 pan3-001 protein_coding Danio_rerio 0 889
ENSMUST00000176553 Pan3-017 protein_coding Mus_musculus 0 645
ENSMUST00000176856 Pan3-015 processed_transcript Mus_musculus 0 617
ENSMUST00000177496 Pan3-016 retained_intron Mus_musculus 0 612
ENSMUST00000176202 Pan3-008 retained_intron Mus_musculus 0 425
ENSMUST00000177327 Pan3-010 retained_intron Mus_musculus 0 366
ENSMUST00000176806 Pan3-013 retained_intron Mus_musculus 0 327
ENSMUST00000176817 Pan3-014 processed_transcript Mus_musculus 0 261
ENSMUST00000176357 Pan3-011 processed_transcript Mus_musculus 0 261

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