C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381795 RBM47-002 ENSG00000163694 9606 - 4:40423267-40515973 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLungOvaryPlacentaTestisENST00000381795
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Lung Ovary Placenta Testis
ENST00000381795 0.942±0.00 3.582±0.00 0.112±0.00 3.438±0.00 0.102±0.00 36.142±0.00 1.364±0.00 1.475±0.37 1.197±0.00 0.307±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Q CIL_00038Q_0001 CGP 4:40423267-40809985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113725 Rbm47-006 protein_coding Mus_musculus 0 2109
ENSMUST00000113724 Rbm47-002 protein_coding Mus_musculus 0 1439
ENSMUST00000167950 Rbm47-201 protein_coding Mus_musculus 0 1437
ENSMUST00000132606 Rbm47-007 retained_intron Mus_musculus 0 1437
ENSMUST00000094756 Rbm47-005 protein_coding Mus_musculus 0 1437
ENSMUST00000094757 Rbm47-004 protein_coding Mus_musculus 0 1437
ENSMUST00000113726 Rbm47-001 protein_coding Mus_musculus 0 1437
ENSMUST00000145625 Rbm47-011 protein_coding Mus_musculus 0 621
ENSMUST00000127275 Rbm47-003 protein_coding Mus_musculus 5e-27 128
ENSMUST00000131838 Rbm47-010 protein_coding Mus_musculus 1e-22 113

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