C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: superoxide dismutase 3, extracellular
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382120 SOD3-001 ENSG00000109610 9606 + 4:24795463-24800842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382120 262.817±0.00 15.427±0.00 8.143±0.00 11.111±9.06 5.241±0.00 20.337±16.52 18.837±17.66 27.963±27.88 6.264±0.55 24.465±20.66 10.507±8.61 26.194±20.18 136.622±46.64 91.597±61.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OT CIL_0002OT_0001 CGP 4:24517441-24800842
CIL_0002OS CIL_0002OS_0001 CGP 4:24789912-24980204

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0004784 IBA superoxide dismutase activity
GO:0005507 IBA copper ion binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IBA cytoplasm
GO:0005796 TAS Golgi lumen
GO:0005802 IEA trans-Golgi network
GO:0006801 IEA superoxide metabolic process
GO:0006979 IEA response to oxidative stress
GO:0008201 IEA heparin binding
GO:0008270 IBA zinc ion binding
GO:0019430 IBA removal of superoxide radicals
GO:0031012 IDA extracellular matrix
GO:0046688 IEA response to copper ion
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101208 Sod3-201 protein_coding Mus_musculus 0 375

Loading