C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382141 RP11-307N16.6-001 ENSG00000273167 9606 + 13:23979700-24321031 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000382141
Transcript ID Testis
ENST00000382141 1.654±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FK CIL_0008FK_0001 VISTA 13:23782295-24387118

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022566 Spata13-201 protein_coding Mus_musculus 0 1840
ENSMUST00000160973 Spata13-001 protein_coding Mus_musculus 0 1840
ENSMUST00000162945 Spata13-002 protein_coding Mus_musculus 0 1703
ENSMUST00000162939 Spata13-003 retained_intron Mus_musculus 0 900
ENSMUST00000159747 Arhgef4-004 protein_coding Mus_musculus 0 429
ENSMUST00000047664 Arhgef4-001 protein_coding Mus_musculus 0 398
ENSMUST00000162599 Arhgef4-005 protein_coding Mus_musculus 0 241

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