C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligand dependent nuclear receptor corepressor-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382226 LCORL-201 ENSG00000178177 9606 - 4:17880629-18021860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382226
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382226 0.598±0.00 0.334±0.00 0.349±0.17 0.336±0.00 0.759±0.00 0.244±0.00 0.203±0.00 0.371±0.00 0.620±0.38 0.879±0.59 2.535±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OQ CIL_0002OQ_0001 CGP 4:17810902-18021876
CIL_0002OP CIL_0002OP_0001 CGP 4:17841199-20620561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016026 Lcorl-002 protein_coding Mus_musculus 0 6497
ENSMUST00000087164 Lcorl-005 protein_coding Mus_musculus 0 6244
ENSMUST00000045586 Lcorl-001 protein_coding Mus_musculus 0 1445
ENSMUST00000190036 Lcorl-007 protein_coding Mus_musculus 0 1092
ENSMUST00000121573 Lcorl-004 protein_coding Mus_musculus 0 998
ENSMUST00000156295 Lcorl-006 retained_intron Mus_musculus 0 942
ENSMUST00000067997 Lcorl-003 protein_coding Mus_musculus 0 754
ENSMUST00000187615 Lcorl-009 nonsense_mediated_decay Mus_musculus 0 750
ENSMUST00000189859 Lcorl-010 protein_coding Mus_musculus 0 468
ENSMUST00000186633 Lcorl-008 nonsense_mediated_decay Mus_musculus 0 350

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