C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CBP80/20-dependent translation initiation factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382998 CTIF-003 ENSG00000134030 9606 + 18:48539158-48861906 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000382998
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000382998 7.302±0.00 2.361±0.00 6.057±4.99 14.312±0.00 2.884±0.00 3.438±0.00 4.737±0.00 1.373±0.00 4.085±0.00 7.467±5.48 3.162±1.86 3.949±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P6 CIL_0008P6_0001 VISTA 18:48477632-49083007
CIL_0007UR CIL_0007UR_0001 VISTA 18:48480781-49082143
CIL_0000B3 CIL_0000B3_0002 CGP 18:48539046-48950711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006446 IMP regulation of translational initiation
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165559 Ctif-201 protein_coding Mus_musculus 0 1317
ENSDART00000127740 CTIF-201 protein_coding Danio_rerio 8e-35 154

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