C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 71, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383763 TRIM71-001 ENSG00000206557 9606 + 3:32818018-32897826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENST00000383763
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000383763 0.005±0.00 0.004±0.00 0.441±0.00 0.185±0.03 0.004±0.00 0.532±0.00 0.024±0.02 0.406±0.23 0.134±0.10 0.203±0.02 3.948±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020K CIL_00020K_0002 CGP 3:32685145-32897826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 ISS G1/S transition of mitotic cell cycle
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0001843 IEA neural tube closure
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding
GO:0008543 ISS fibroblast growth factor receptor signaling pathway
GO:0010586 ISS miRNA metabolic process
GO:0016874 IEA ligase activity
GO:0021915 ISS neural tube development
GO:0035198 ISS miRNA binding
GO:0035278 ISS negative regulation of translation involved in gene silencing by miRNA
GO:0051246 IEA regulation of protein metabolic process
GO:0051865 ISS protein autoubiquitination
GO:0060964 ISS regulation of gene silencing by miRNA
GO:0071310 IEA cellular response to organic substance
GO:0072089 ISS stem cell proliferation
GO:2000177 ISS regulation of neural precursor cell proliferation
GO:2000637 IEA positive regulation of gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111816 Trim71-001 protein_coding Mus_musculus 0 2745

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