C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383807 FANCD2-201 ENSG00000144554 9606 + 3:10026429-10101930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000383807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000383807 0.142±0.00 0.440±0.00 0.054±0.00 0.208±0.00 0.522±0.20 1.796±0.00 0.260±0.00 0.571±0.00 0.010±0.00 0.593±0.32 0.275±0.07 2.782±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D5 CIL_0002D5_0001 CGP 3:9962537-10101930
CIL_00059I CIL_00059I_0001 CGP 3:10026414-10108231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005794 IDA Golgi apparatus
GO:0006281 TAS DNA repair
GO:0010332 IDA response to gamma radiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0070182 IPI DNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036340 Fancd2-001 protein_coding Mus_musculus 0 3465
ENSMUST00000129462 Fancd2-006 processed_transcript Mus_musculus 0 200
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000003 69

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