C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 5B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389082 DENND5B-001 ENSG00000170456 9606 - 12:31382223-31591097 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000389082
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000389082 1.254±0.00 1.036±0.00 0.665±0.00 2.489±1.58 1.300±0.00 1.129±0.00 1.644±0.76 0.465±0.00 1.026±0.60 0.504±0.42 2.371±1.97 0.300±0.11 4.072±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DK CIL_0003DK_0002 CGP 12:31280584-31591097

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016020 IBA membrane
GO:0016021 IEA integral component of membrane
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IDA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111557 Dennd5b-001 protein_coding Mus_musculus 0 5583
ENSMUST00000150436 Dennd5b-002 retained_intron Mus_musculus 0 3783
ENSMUST00000145555 Dennd5b-004 protein_coding Mus_musculus 0 390
ENSMUST00000127727 Dennd5b-003 protein_coding Mus_musculus 0 359

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