C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor-related protein 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389484 LRP1B-001 ENSG00000168702 9606 - 2:140231423-142131701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyMusclePlacentaTestisENST00000389484
Transcript ID Adipose Brain Colon Kidney Muscle Placenta Testis
ENST00000389484 0.085±0.00 2.336±0.80 0.036±0.00 0.048±0.02 0.425±0.29 0.009±0.00 0.052±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NW CIL_0003NW_0001 CGP 2:140231423-143055832

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 IEA low-density lipoprotein receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006898 IEA receptor-mediated endocytosis
GO:0015031 TAS protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043235 IDA receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052550 Lrp1b-001 protein_coding Mus_musculus 0 16990
ENSMUST00000167270 Lrp1b-201 protein_coding Mus_musculus 0 12060
ENSDART00000139033 lrp1bb-001 protein_coding Danio_rerio 0 2728
ENSMUST00000142546 Lrp1b-002 protein_coding Mus_musculus 0 2569
ENSMUST00000138700 Lrp1b-007 retained_intron Mus_musculus 0 2217
ENSMUST00000185258 Lrp1b-202 protein_coding Mus_musculus 0 649
ENSMUST00000134032 Lrp1b-004 retained_intron Mus_musculus 0 599
ENSMUST00000133104 Lrp1b-006 retained_intron Mus_musculus 0 448
ENSMUST00000129974 Lrp1b-003 processed_transcript Mus_musculus 0 259

Loading