C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ral GTPase activating protein, alpha subunit 1 (catalytic)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389698 RALGAPA1-002 ENSG00000174373 9606 - 14:35538352-35809226 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLungOvaryPlacentaTestisENST00000389698
Transcript ID Adipose Bladder Brain Colon Lung Ovary Placenta Testis
ENST00000389698 0.551±0.00 1.134±0.00 2.669±0.00 0.402±0.00 1.714±0.79 1.324±0.54 0.358±0.03 1.713±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MF CIL_0008MF_0001 VISTA 14:35250818-35851792
CIL_0008ME CIL_0008ME_0001 VISTA 14:35273755-35874460
CIL_0007LS CIL_0007LS_0001 UCNEbase 14:35509773-36362792
CIL_00045O CIL_00045O_0001 CGP 14:35534042-35809304
CIL_00045N CIL_00045N_0001 CGP 14:35538352-35932325

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005488 IEA binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0017123 ISS Ral GTPase activator activity
GO:0032859 ISS activation of Ral GTPase activity
GO:0046982 IPI protein heterodimerization activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085385 Ralgapa1-201 protein_coding Mus_musculus 0 8750
ENSMUST00000110687 Ralgapa1-202 protein_coding Mus_musculus 0 8737
ENSMUST00000061934 Gm9812-201 pseudogene Mus_musculus 9.99995e-41 174

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