C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389759 PKP4-002 ENSG00000144283 9606 + 2:158457112-158681429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389759
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389759 9.482±0.00 6.563±0.00 19.714±5.43 7.273±0.00 6.410±3.05 5.148±3.07 24.796±19.42 1.891±0.23 5.793±2.75 4.203±0.00 12.581±10.25 2.859±0.87 8.534±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0001 CGP 2:158456964-158862958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007043 ISS cell-cell junction assembly
GO:0007267 NAS cell-cell signaling
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0014069 IEA postsynaptic density
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 IDA desmosome
GO:0030155 NAS regulation of cell adhesion
GO:0030496 IDA midbody
GO:0032321 IDA positive regulation of Rho GTPase activity
GO:0032467 IMP positive regulation of cytokinesis
GO:0044291 IDA cell-cell contact zone
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051233 IDA spindle midzone
GO:0072686 IDA mitotic spindle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102754 Pkp4-001 protein_coding Mus_musculus 0 5590
ENSMUST00000112577 Pkp4-010 protein_coding Mus_musculus 0 4468
ENSMUST00000168631 Pkp4-201 protein_coding Mus_musculus 0 4337
ENSMUST00000183359 Pkp4-003 nonsense_mediated_decay Mus_musculus 0 4161
ENSMUST00000184332 Pkp4-005 nonsense_mediated_decay Mus_musculus 0 2872
ENSMUST00000151452 Pkp4-013 processed_transcript Mus_musculus 0 2833
ENSMUST00000037903 Pkp4-004 protein_coding Mus_musculus 0 2305
ENSMUST00000123908 Pkp4-002 protein_coding Mus_musculus 0 2305
ENSMUST00000124725 Pkp4-011 processed_transcript Mus_musculus 0 1011
ENSMUST00000124127 Pkp4-012 processed_transcript Mus_musculus 0 612
ENSMUST00000183625 Pkp4-006 processed_transcript Mus_musculus 0 508
ENSMUST00000184705 Pkp4-007 nonsense_mediated_decay Mus_musculus 0 329
ENSMUST00000126749 Pkp4-009 processed_transcript Mus_musculus 0 211
ENSMUST00000122888 Pkp4-008 processed_transcript Mus_musculus 0 211

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