C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UV-stimulated scaffold protein A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389851 UVSSA-001 ENSG00000163945 9606 + 4:1347316-1387944 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyOvaryPlacentaENST00000389851
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Ovary Placenta
ENST00000389851 0.643±0.00 1.483±0.00 0.598±0.00 0.472±0.00 0.473±0.23 0.543±0.00 0.464±0.00 0.538±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LM CIL_0006LM_0001 CGP 4:1289851-1388049
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 IMP RNA polymerase II core binding
GO:0005515 IPI protein binding
GO:0005694 IDA chromosome
GO:0006283 IMP transcription-coupled nucleotide-excision repair
GO:0009411 IMP response to UV
GO:0016567 IMP protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087864 Uvssa-001 protein_coding Mus_musculus 0 1181
ENSMUST00000185821 Uvssa-004 protein_coding Mus_musculus 0 1177
ENSMUST00000131752 Uvssa-002 nonsense_mediated_decay Mus_musculus 0 785
ENSMUST00000153980 Uvssa-003 retained_intron Mus_musculus 0 784

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