C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391360 RP11-347C18.1-001 ENSG00000243979 9606 + 8:94891239-94892107 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleTestisENST00000391360
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Testis
ENST00000391360 0.044±0.00 0.249±0.00 0.068±0.00 0.044±0.00 0.082±0.00 0.403±0.00 0.211±0.19 0.020±0.00 0.040±0.00 0.040±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 571
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 488
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 390
ENSMUST00000117990 Gm7831-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 368
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000118406 Gm15002-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 244
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 1.4013e-45 187

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