C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391998 TPM3P6-001 ENSG00000250731 9606 + 19:53479350-53480091 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000391998
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000391998 0.129±0.00 0.145±0.00 0.471±0.00 0.102±0.00 0.021±0.00 0.033±0.00 0.037±0.00 0.087±0.00 0.207±0.00 0.173±0.00 0.129±0.12 0.100±0.05 0.076±0.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 893
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 881
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 774
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 774
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 625
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 625
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 507
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 486
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 486
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 370
ENSMUST00000116350 Tpm3-rs2-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 337
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 337
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 255
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 239
ENSMUST00000151798 Tpm3-012 retained_intron Mus_musculus 0 213
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 3.00018e-42 176

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