C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392185 SNX9-001 ENSG00000130340 9606 + 6:157823264-157945077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungOvaryPlacentaTestisENST00000392185
Transcript ID Bladder Brain Breast Heart Liver Lung Ovary Placenta Testis
ENST00000392185 1.831±0.00 1.089±0.00 1.632±0.00 1.382±0.28 2.527±0.00 2.390±0.63 15.568±20.27 11.885±12.52 8.981±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055E CIL_00055E_0001 CGP 6:157381133-157945077
CIL_00055D CIL_00055D_0001 CGP 6:157700387-158099176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0005515 IPI:IEA protein binding
GO:0005545 IDA 1-phosphatidylinositol binding
GO:0005737 IDA cytoplasm
GO:0005768 IBA endosome
GO:0005802 IDA trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0006886 IMP intracellular protein transport
GO:0006897 IMP endocytosis
GO:0006898 IMP receptor-mediated endocytosis
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 IMP endosomal transport
GO:0030136 IDA clathrin-coated vesicle
GO:0030659 IDA cytoplasmic vesicle membrane
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032461 IDA positive regulation of protein oligomerization
GO:0035091 IEA phosphatidylinositol binding
GO:0036089 IMP cleavage furrow formation
GO:0042803 IPI protein homodimerization activity
GO:0042995 IEA cell projection
GO:0043547 IDA positive regulation of GTPase activity
GO:0051044 IDA positive regulation of membrane protein ectodomain proteolysis
GO:0060988 IDA lipid tube assembly
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002436 Snx9-201 protein_coding Mus_musculus 0 2148
ENSDART00000104476 snx9a-001 protein_coding Danio_rerio 0 374
ENSDART00000098593 snx9a-003 retained_intron Danio_rerio 0 235

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