C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: casein kinase 1, delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392334 CSNK1D-002 ENSG00000141551 9606 - 17:82244362-82273697 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartPlacentaENST00000392334
Transcript ID Colon Heart Placenta
ENST00000392334 2.505±0.00 0.647±0.00 26.074±10.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019I CIL_00019I_0001 CGP 17:82101460-82261129
CIL_00043R CIL_00043R_0002 CGP 17:82228397-82273731
CIL_00075P CIL_00075P_0001 CGP 17:82239023-82317602

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0001934 IMP positive regulation of protein phosphorylation
GO:0004672 ISS:IEA protein kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005819 IDA spindle
GO:0005829 TAS cytosol
GO:0005876 IDA spindle microtubule
GO:0005886 IDA plasma membrane
GO:0006281 TAS DNA repair
GO:0006468 IDA:IEA protein phosphorylation
GO:0007165 TAS signal transduction
GO:0016055 IEA Wnt signaling pathway
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0032436 ISS positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032922 ISS circadian regulation of gene expression
GO:0042752 ISS regulation of circadian rhythm
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050321 IEA tau-protein kinase activity
GO:0051225 IDA spindle assembly
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070575 Csnk1d-002 protein_coding Mus_musculus 0 2239
ENSMUST00000018274 Csnk1d-001 protein_coding Mus_musculus 0 1988
ENSMUST00000120859 Csnk1e-003 protein_coding Mus_musculus 0 872
ENSMUST00000117786 Csnk1e-001 protein_coding Mus_musculus 0 872
ENSMUST00000122044 Csnk1e-002 protein_coding Mus_musculus 0 865
ENSMUST00000154483 Csnk1d-006 protein_coding Mus_musculus 0 767
ENSMUST00000141071 Csnk1d-008 processed_transcript Mus_musculus 0 689
ENSMUST00000136003 Csnk1e-006 retained_intron Mus_musculus 0 682
ENSMUST00000137028 Csnk1e-008 retained_intron Mus_musculus 0 496
ENSMUST00000131375 Csnk1d-003 processed_transcript Mus_musculus 0 446
ENSMUST00000144790 Csnk1e-005 protein_coding Mus_musculus 0 444
ENSMUST00000155070 Csnk1d-005 retained_intron Mus_musculus 0 329
ENSMUST00000146837 Csnk1d-004 nonsense_mediated_decay Mus_musculus 0 265
ENSMUST00000139267 Csnk1d-007 processed_transcript Mus_musculus 3e-16 92

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