C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin B pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392399 UBBP1-001 ENSG00000230037 9606 - 2:136329441-136329913 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392399
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392399 0.294±0.00 0.643±0.00 1.044±0.00 0.601±0.00 0.622±0.00 0.246±0.00 0.695±0.00 0.805±0.00 0.518±0.00 0.853±0.00 0.057±0.00 0.063±0.00 0.609±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VZ CIL_0006VZ_0001 CGP 2:136114349-137677717

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000136938 Ubb-002 protein_coding Mus_musculus 0 531
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 531
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 470
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 470
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 451
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 348
ENSMUST00000122457 Gm8648-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000120012 Gm14516-001 processed_pseudogene Mus_musculus 1e-33 147
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 3e-20 102
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 0.00000000008 71

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