C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392701 GALNT3-001 ENSG00000115339 9606 - 2:165747591-165794682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000392701
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000392701 0.095±0.00 0.395±0.00 0.083±0.01 0.436±0.00 1.272±0.79 0.024±0.00 0.552±0.42 0.324±0.25 0.962±0.10 2.896±2.75 1.248±0.63 3.518±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0001 VISTA 2:165345029-165948304
CIL_0003S2 CIL_0003S2_0002 CGP 2:165469647-165794682
CIL_0006CI CIL_0006CI_0001 CGP 2:165747591-165953843

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005509 IDA calcium ion binding
GO:0005794 IDA Golgi apparatus
GO:0005975 NAS carbohydrate metabolic process
GO:0008152 IEA metabolic process
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0018242 IDA protein O-linked glycosylation via serine
GO:0018243 IDA protein O-linked glycosylation via threonine
GO:0030145 IDA manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028378 Galnt3-001 protein_coding Mus_musculus 0 3127
ENSMUST00000155453 Galnt3-004 processed_transcript Mus_musculus 0 843
ENSMUST00000153563 Galnt3-002 processed_transcript Mus_musculus 0 501
ENSMUST00000150793 Galnt3-003 processed_transcript Mus_musculus 0 483
ENSMUST00000190477 RP23-359O14.2-001 processed_pseudogene Mus_musculus 4e-22 111

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