C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392825 GALNT13-001 ENSG00000144278 9606 + 2:153871913-154453849 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverOvaryPlacentaTestisENST00000392825
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Ovary Placenta Testis
ENST00000392825 0.232±0.00 0.094±0.00 0.015±0.00 2.672±0.00 0.223±0.00 0.128±0.00 0.180±0.00 0.069±0.01 0.121±0.06 0.276±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075A CIL_00075A_0001 CGP 2:153477338-154453849
CIL_00075B CIL_00075B_0001 CGP 2:153871913-154858352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0006493 IEA protein O-linked glycosylation
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112635 Galnt13-002 protein_coding Mus_musculus 0 2844
ENSMUST00000112636 Galnt13-001 protein_coding Mus_musculus 0 2673
ENSMUST00000068595 Galnt13-201 protein_coding Mus_musculus 0 2399
ENSMUST00000112634 Galnt13-003 protein_coding Mus_musculus 0 2231
ENSMUST00000136642 Galnt13-004 protein_coding Mus_musculus 0 440

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