C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392894 RNF13-001 ENSG00000082996 9606 + 3:149812708-149962139 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392894
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392894 15.012±0.00 10.155±0.00 1.656±0.00 39.668±0.00 16.699±0.00 12.503±0.00 6.348±4.06 14.736±0.00 7.570±0.00 12.594±0.86 10.804±0.00 7.491±2.48 10.604±3.39 10.727±5.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R7 CIL_0002R7_0001 CGP 3:149738470-149968385
CIL_0002R6 CIL_0002R6_0001 CGP 3:149761105-149968385
CIL_0002R5 CIL_0002R5_0001 CGP 3:149812708-150050788

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005765 ISS lysosomal membrane
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0031902 ISS late endosome membrane
GO:0046872 IEA metal ion binding
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041826 Rnf13-201 protein_coding Mus_musculus 0 1903

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