C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin binding LIM protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392952 ABLIM1-009 ENSG00000099204 9606 - 10:114431113-114526931 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartLiverMuscleOvaryENST00000392952
Transcript ID Adipose Bladder Breast Heart Liver Muscle Ovary
ENST00000392952 36.703±0.00 1.661±0.00 7.567±3.75 41.158±0.00 4.477±0.00 5.001±0.00 20.793±10.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OJ CIL_0002OJ_0001 CGP 10:114294824-114685003
CIL_0001R6 CIL_0001R6_0002 CGP 10:114431113-114899832

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007010 IEA cytoskeleton organization
GO:0007411 TAS axon guidance
GO:0007601 TAS visual perception
GO:0008270 IEA zinc ion binding
GO:0009887 TAS organ morphogenesis
GO:0015629 TAS actin cytoskeleton
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0042384 IMP cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111528 Ablim1-015 protein_coding Mus_musculus 0 1877
ENSMUST00000111529 Ablim1-013 protein_coding Mus_musculus 0 1604
ENSMUST00000111544 Ablim1-002 protein_coding Mus_musculus 0 1509
ENSMUST00000111526 Ablim1-019 protein_coding Mus_musculus 0 1504
ENSMUST00000104902 Ablim1-201 protein_coding Mus_musculus 0 1079
ENSMUST00000111559 Ablim1-008 protein_coding Mus_musculus 0 1079
ENSMUST00000079360 Ablim1-004 protein_coding Mus_musculus 0 1079
ENSMUST00000111555 Ablim1-018 protein_coding Mus_musculus 0 1057
ENSMUST00000111558 Ablim1-020 protein_coding Mus_musculus 0 1051
ENSMUST00000111546 Ablim1-016 protein_coding Mus_musculus 0 1022
ENSMUST00000111550 Ablim1-017 protein_coding Mus_musculus 0 800
ENSMUST00000099294 Ablim1-001 protein_coding Mus_musculus 0 795
ENSMUST00000137389 Ablim1-011 processed_transcript Mus_musculus 0 717
ENSMUST00000156316 Ablim1-003 retained_intron Mus_musculus 0 606
ENSMUST00000133782 Ablim1-007 retained_intron Mus_musculus 0 531

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