C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: speckle-type POZ protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393328 SPOP-001 ENSG00000121067 9606 - 17:49598884-49678110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000393328
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000393328 3.039±0.00 4.703±0.00 4.940±0.50 8.167±0.00 11.950±0.00 5.913±0.00 3.584±0.65 3.157±0.00 4.423±0.00 16.490±0.00 5.820±3.66 3.333±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000877 CIL_000877_0001 VISTA 17:49438854-50041456
CIL_0009BV CIL_0009BV_0001 VISTA 17:49438877-50041441
CIL_0007QJ CIL_0007QJ_0001 VISTA 17:49459872-50061823
CIL_0004N3 CIL_0004N3_0002 CGP 17:49575858-49678234
CIL_0004N2 CIL_0004N2_0002 CGP 17:49598884-49709014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001085 IEA RNA polymerase II transcription factor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0016607 IEA nuclear speck
GO:0031463 IDA Cul3-RING ubiquitin ligase complex
GO:0031625 IPI ubiquitin protein ligase binding
GO:0042593 IEA glucose homeostasis
GO:0042787 IEA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:1902237 IEA positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:2000676 IEA positive regulation of type B pancreatic cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107724 Spop-002 protein_coding Mus_musculus 0 2362
ENSMUST00000107722 Spop-001 protein_coding Mus_musculus 0 2362
ENSDART00000011922 spopla-001 protein_coding Danio_rerio 0 627
ENSDART00000129143 spopla-201 protein_coding Danio_rerio 0 604
ENSMUST00000150922 Spop-005 processed_transcript Mus_musculus 0 599
ENSMUST00000150884 Spop-003 protein_coding Mus_musculus 0 520
ENSMUST00000098878 Gm4778-201 protein_coding Mus_musculus 0 466
ENSMUST00000159517 Gm4778-001 protein_coding Mus_musculus 0 466
ENSMUST00000075953 Tdpoz4-201 protein_coding Mus_musculus 0 429
ENSMUST00000098879 Tdpoz5-201 protein_coding Mus_musculus 0 425
ENSMUST00000091692 Gm10697-201 protein_coding Mus_musculus 0 425
ENSMUST00000127713 Spop-004 protein_coding Mus_musculus 0 394
ENSMUST00000179064 Gm4858-201 protein_coding Mus_musculus 0 392

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