C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: four and a half LIM domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393353 FHL2-003 ENSG00000115641 9606 - 2:105360826-105399051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393353
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393353 21.462±0.00 7.847±0.00 4.425±0.00 12.557±0.00 36.582±0.00 4.515±0.00 2.142±1.40 10.885±0.00 5.747±0.00 154.504±56.48 35.902±8.85 86.296±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096O CIL_00096O_0001 VISTA 2:104780753-105381700
CIL_00010E CIL_00010E_0001 CGP 2:105337359-105438513
CIL_00010G CIL_00010G_0001 CGP 2:105357712-105894274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005925 IDA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0009725 IMP response to hormone
GO:0015629 IDA actin cytoskeleton
GO:0030521 NAS androgen receptor signaling pathway
GO:0042802 IPI identical protein binding
GO:0043066 IDA negative regulation of apoptotic process
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0050681 NAS androgen receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185893 Fhl2-002 protein_coding Mus_musculus 0 974
ENSMUST00000008280 Fhl2-001 protein_coding Mus_musculus 0 974
ENSMUST00000187357 Fhl2-004 protein_coding Mus_musculus 0 307

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