C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393405 SNX11-001 ENSG00000002919 9606 + 17:48107558-48123074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartOvaryPlacentaTestisENST00000393405
Transcript ID Brain Breast Heart Ovary Placenta Testis
ENST00000393405 0.580±0.00 1.282±0.00 0.354±0.00 1.556±0.00 1.887±0.00 1.710±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IDA endosome
GO:0006886 IEA:IBA intracellular protein transport
GO:0016020 IEA membrane
GO:0016050 IMP vesicle organization
GO:0035091 IEA phosphatidylinositol binding
GO:1901981 IDA phosphatidylinositol phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021246 Snx11-002 protein_coding Mus_musculus 0 839
ENSMUST00000127375 Snx11-003 protein_coding Mus_musculus 0 741
ENSMUST00000107661 Snx11-001 protein_coding Mus_musculus 5e-25 121

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