C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2',3'-cyclic nucleotide 3' phosphodiesterase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393892 CNP-001 ENSG00000173786 9606 + 17:41966741-41977731 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverLungMuscleENST00000393892
Transcript ID Bladder Brain Liver Lung Muscle
ENST00000393892 1.377±0.00 63.240±50.22 1.533±0.00 1.359±0.00 2.217±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KT CIL_0000KT_0002 CGP 17:41930635-41977731
CIL_0006EX CIL_0006EX_0001 CGP 17:41966741-42021376

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0003723 IEA RNA binding
GO:0004113 IEA 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
GO:0005524 IEA ATP binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005741 IEA mitochondrial outer membrane
GO:0005743 IEA mitochondrial inner membrane
GO:0005874 IDA microtubule
GO:0005886 IEA plasma membrane
GO:0005902 IEA microvillus
GO:0007268 TAS synaptic transmission
GO:0007409 IEA axonogenesis
GO:0007568 IEA aging
GO:0008344 IEA adult locomotory behavior
GO:0009214 IEA cyclic nucleotide catabolic process
GO:0009636 IEA response to toxic substance
GO:0016020 IDA:IEA membrane
GO:0016301 IEA kinase activity
GO:0021762 IEP substantia nigra development
GO:0030551 IEA cyclic nucleotide binding
GO:0030900 IEA forebrain development
GO:0031143 IEA pseudopodium
GO:0032496 IEA response to lipopolysaccharide
GO:0035748 IEA myelin sheath abaxonal region
GO:0035749 IEA myelin sheath adaxonal region
GO:0042995 IEA cell projection
GO:0043209 IEA myelin sheath
GO:0046902 IEA regulation of mitochondrial membrane permeability
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048709 IEA oligodendrocyte differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103120 Cnp-001 protein_coding Mus_musculus 0 1411
ENSMUST00000150414 Cnp-002 processed_transcript Mus_musculus 0 1345
ENSMUST00000147403 Cnp-003 processed_transcript Mus_musculus 0 922

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