C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain, testis-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394530 BRDT-201 ENSG00000137948 9606 + 1:91949371-92014426 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastPlacentaTestisENST00000394530
Transcript ID Adrenal Brain Breast Placenta Testis
ENST00000394530 0.020±0.00 0.048±0.00 0.003±0.00 0.024±0.00 21.722±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DI CIL_0008DI_0001 VISTA 1:91505983-92108430
CIL_0008YV CIL_0008YV_0001 VISTA 1:91545179-92146674
CIL_0005ZR CIL_0005ZR_0001 CGP 1:91680343-92014426
CIL_0005ZS CIL_0005ZS_0001 CGP 1:91949371-92063536

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001207 ISS histone displacement
GO:0003713 TAS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006338 ISS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007140 ISS male meiosis
GO:0007141 ISS male meiosis I
GO:0007283 ISS spermatogenesis
GO:0008380 IEA RNA splicing
GO:0030154 IEA cell differentiation
GO:0042393 IDA histone binding
GO:0043484 ISS regulation of RNA splicing
GO:0051039 ISS positive regulation of transcription during meiosis
GO:0070577 ISS lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031215 Brdt-001 protein_coding Mus_musculus 0 1014
ENSMUST00000112677 Brdt-003 protein_coding Mus_musculus 0 499
ENSMUST00000162804 Brdt-002 processed_transcript Mus_musculus 0 302

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