C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394667 RPL34-001 ENSG00000109475 9606 + 4:108620566-108625255 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394667
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394667 286.917±0.00 78.644±0.00 271.595±52.64 213.996±51.49 438.044±41.75 177.408±35.07 402.767±35.54 355.106±108.85 600.855±305.58 276.910±50.96 1051.518±629.40 682.911±179.49 275.806±112.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T5 CIL_0008T5_0001 VISTA 4:108033184-108635877
CIL_000872 CIL_000872_0001 VISTA 4:108310752-108912309

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079085 Rpl34-002 protein_coding Mus_musculus 0 536
ENSMUST00000062601 Rpl34-001 protein_coding Mus_musculus 0 510
ENSMUST00000084445 Gm10154-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000177415 Gm4705-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000121998 Rpl34-ps1-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000136334 Gm10086-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000081679 Gm6404-201 processed_pseudogene Mus_musculus 0 470
ENSMUST00000117957 Gm7857-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000135691 Rpl34-004 retained_intron Mus_musculus 0 377
ENSMUST00000133802 Rpl34-003 retained_intron Mus_musculus 0 375
ENSMUST00000104927 Gm2178-201 protein_coding Mus_musculus 0 363
ENSMUST00000122371 Gm13786-001 processed_pseudogene Mus_musculus 0 270

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